BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB017D10LP1|AL427160
(895 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1582 941 0.0
3x_Contig280 641 0.0
>3x_Contig1582
Length = 14087
Score = 941 bits (474), Expect = 0.0
Identities = 502/506 (99%), Gaps = 4/506 (0%)
Strand = Plus / Plus
Query: 385 atgaatcatgtgacaacaatgagcttcttgtagatatcgagaaagttagaaat-gatacc 443
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 15 atgaatcatgtgacaa-aatgagcttcttgtagatatcgagaaagttagaaatagatacc 73
Query: 444 tttgacgcagatatagaaatggatgacagctatgttgattctgactcgcaaggaaatctt 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 tttgacgcagatatagaaatggatgacagctatgttgattctgactcgcaaggaaatctt 133
Query: 504 gatatcaatgctgatccaggcgctgcagaacacgatcaattggttgactacgaaactgaa 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 gatatcaatgctgatccaggcgctgcagaacacgatcaattggttgactacgaaactgaa 193
Query: 564 ccatcggaggcaccttcaggcattgccaccccagtgccaagaggtgaagaggattcaaac 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 ccatcggaggcaccttcaggcattgccaccccagtgccaagaggtgaagaggattcaaac 253
Query: 624 tgttccatgatgaattctcataccgctttcagggatattgatgtgttttcgtacaattat 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tgttccatgatgaattctcataccgctttcagggatattgatgtgttttcgtacaattat 313
Query: 684 ttctttggaagaacagcagctgaacgtgcgcttgatcccagatactcaaaaatacatcat 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ttctttggaagaacagcagctgaacgtgcgcttgatcccagatactcaaaaatacatcat 373
Query: 744 ttgagacacgagattggtttattcttacacaagctcttcaaattttttaaatcaaaatta 803
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 374 ttgagacacgagattggtttattcttacacaagctcttcaaa-tttttaaatcaaaatta 432
Query: 804 tgagaattcaacatccgtattccagactttattacatggtttgaaggtctggtttactga 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgagaattcaacatccgtattccagactttattacatggtttgaaggtctggtttactga 492
Query: 864 tgttgggcaagaadactatattcatt 889
||||||||||||| ||||||||||||
Sbjct: 493 tgttgggcaagaa-actatattcatt 517
>3x_Contig280
Length = 1466
Score = 641 bits (323), Expect = 0.0
Identities = 325/326 (99%)
Strand = Plus / Minus
Query: 1 aagtnactgactacaggctctttttacaggatgccgatgtagagaactccgagaaatggg 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aagtcactgactacaggctctttttacaggatgccgatgtagagaactccgagaaatggg 278
Query: 61 gtggattccagtttgatagaagaaaatatttgcctgaatttcaacaaattgagtggcacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gtggattccagtttgatagaagaaaatatttgcctgaatttcaacaaattgagtggcacc 218
Query: 121 aaccgtcatcggatgaagttgattttgccatcaagttgattgatcacttctattgctatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 aaccgtcatcggatgaagttgattttgccatcaagttgattgatcacttctattgctatg 158
Query: 181 ctgtaggaatgacagagaaacttatggacaaacctcaaaacgactttagttatgttgaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 ctgtaggaatgacagagaaacttatggacaaacctcaaaacgactttagttatgttgaca 98
Query: 241 atatgaaaaagaatattttgatcctaaccaatattctatcgggtagtagcatcctatatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 atatgaaaaagaatattttgatcctaaccaatattctatcgggtagtagcatcctatatg 38
Query: 301 atgctgattataatcagaataacaaa 326
||||||||||||||||||||||||||
Sbjct: 37 atgctgattataatcagaataacaaa 12
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7509
Number of Sequences: 1807
Number of extensions: 7509
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 2
length of query: 895
length of database: 10,358,551
effective HSP length: 16
effective length of query: 879
effective length of database: 10,329,639
effective search space: 9079752681
effective search space used: 9079752681
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.8 bits)